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Computationally Classifying Fungal Lifestyles
… to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm could … 25  Dothideomycetes species, and also provides more information about speciation events. …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… of data for each of the different analysis? A:  We go from sample submission to data analysis, and we can help train … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… to go beyond understanding which microbes are present in a sample, to generate data about which organisms are active, … methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a … generated plenty of insights, many studies don’t report the information needed to reuse and compare data. “So we …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… produce antibiotics. Still, the team estimates that genomic information is only available for a fraction of extant … shape of the microbial tree of life by filling in genomic information for thousands of branches,” said Natalia … genomes (MAGs) reconstructed from sequenced environmental samples in a previous study. The team analyzed over 80,000 …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… missing from the analysis (due to extinction or you didn’t sample it). But once we deciphered the subgenomes we came up …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the cell. The team assembled 130 genomes from their sample — a small proportion of the sample’s billions of bacterial and archaeal cells — and …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… in a controlled manner. These advancements allow controlled sample transport for mass spectrometry applications, for … follow-up meetings, agreements on exchange of materials and samples as well as research visits are organized. Selected … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Natural Prodcast Episode 3: The Primer, Part 3
… and it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … dogmas of molecular biology, DNA is the storage medium for information in ourselves and every living thing that we know … that maybe you had never cultured, that you took a sample from a sponge and you had this sequence, you know …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its … published in  Nature .  Researchers started by collecting samples from Yellowstone’s hot springs, an extreme … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following … times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then sent to the … when these genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with …
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Mo than Meets the Eye: Genomic Insights into Molybdoenzyme Diversity of Seleniivibrio woodruffii strain S4T
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Natural Prodcast Episode 4: Nancy Keller
… We don’t have operons. It’s just getting that initial information, but honestly, it didn’t take that long, or I … folks at UW and they collect all this DNA from various samples, patients, this and that. They’re doing all this 16S … the fungi. Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are …
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