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Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages
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CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea
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High-Quality Draft Genome Sequence of the Opitutaceae Bacterium Strain TAV1, a Symbiont of the Wood-Feeding Termite Reticulitermes flavipes
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a …
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds … of Lawrence Livermore National Laboratory has your backstage pass. …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … on the rhizosphere and interactions between the trees, microbes and soil chemistry offers insights into how these … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a … College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put …
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Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Applying Viral Genomics Expertise to Understanding the Human Virome
… to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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