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Single Cell Research Group
Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … information has allowed the research team to associate climate adaptations with switchgrass biology. Switchgrass … is a valuable resource towards the effort to generate climate resilient switchgrass. Aside from climate-related …
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Exploring Phages at JGI
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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Filling in the Plant Tree of Life
… swaths of the plant tree of life. One project aims to change that. …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … sorghum’s potential to adapt and thrive in our changing climate has earned it a place on the JGI’s Flagship Plant … so understanding sorghum’s survival secrets could change not only how we use and grow sorghum, but other …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less … all across the world and lead to cell death and/or profound changes in the cell physiology during infection.” While all …
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Jeremy Schmutz
… 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. … . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on … know, [beep]ing the proverbial bed, right? Can we make that change and keep the ecosystem services intact that we need … it’s this unique time where the preceding 300 years, that change was not occurring at that pace, right. And then, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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