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Licence to knockdown — the phage gene silencer
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many …
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Plant Pan-Genomics Comes of Age
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The Surprising Structure of a Shrub Willow Sex Chromosome
… Populus trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to the U.S. Department of … some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of …
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Expanding Virophage Diversity
… the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene counts have similarly …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale … Call is focused on genomic science projects that address biofuel and bioproducts production, leveraging efforts …
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Clades of huge phages from across Earth’s ecosystems
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights … Office of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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A Grass Model to Help Improve Giant Miscanthus
… whose biomass can be renewably converted into energy or biofuels. Although a member of the grass family, as its name … capability for growth. While many desirable features of biofuel grasses can be studied from simpler (and smaller) …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that … begins. To support growing sorghum and other C4 plants for biofuel production, John Mullet (Texas A & M and Great Lakes …
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Computationally Classifying Fungal Lifestyles
… an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced … infect most major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution …
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