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Synthetic Biology Informatics Group
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the Community Science Program . The comparative framework provided by these high quality reference genome … to further understand their evolutionary history.  … The work (proposal: award at  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these … functions, traits and competition, illuminating the inner workings of an environment. For example, SIP experiments can … hours to months, followed by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few …
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JGI Scientists Pen Genome Watch Articles
… was triggered by a talk. Woyke was invited to present her work in London in December 2018 at a Symposium at the Royal … . “My experience putting the articles together and working with Andrea has been amazing,” says Woyke. “It’s a great opportunity for JGI to work on these, as it allows us to highlight hot topics in …
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
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Forming Scientific Connections and Building Community
In just two months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while working on their summer projects. Watch the short video here …
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Sequencing Technologies
… approaches, testing various platforms to see what works best for applications. The team works hand in hand with the Project Management Office to …
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Products
… quarter. In general, projects that do not require any rework will have the fastest cycle times, so please ensure …
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The More the Merrier: Making the Case for Plant Pan-genomes
Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature Communication s. The team … can be easily transformed, traits that make them easy to work with bioinformatically and in the laboratory. “We are … from the following institutions were also involved in this work: Estación Experimental de Aula Dei (EEAD-CSIC) (Spain); …
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The Case for Conservation
… for male and female plants of fire moss. Most notably, the work revealed that the U and V sex chromosomes of fire moss … continents were still Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes … could be completed faster without extra crosses. The work wraps more than a decade of working with researchers at …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… conversation with a quick recap of how plants, in general, work. KAROLINA:  We all know plants take up water through … they still get the carbon dioxide they need. Karolina is working to better understand what genetic features make CAM … leaves, often with spikes along their edges. KAROLINA : My work with the JGI focuses on a group of plants called …
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