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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome … data portal … Alga Genome on PhycoCosm data portal … Datasets … Datasets …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and … a conversation from the first episode . You can go to part 3 here . You can find the podcast on  Apple ,  Google ,  …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal … Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science … Support for this research was also provided by the Great Lakes Bioenergy Research Center, U.S. Department of Energy, …
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Blake Simmons
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Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours … pointing device to zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor …
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Natural Prodcast
… about natural products and the science and scientists of secondary metabolism. Natural products, secondary … research, “Natural Prodcast” serves as an important line of communication to the scientific community. Host Dan … and future developments, and how the JGI can be part of that space.   …
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