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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … called lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose … Centers, the Joint BioEnergy Institute and the Great Lakes Bioenergy Research Center. O’Malley is also affiliated …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … get back to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome Institute and head of the Secondary …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … And because the average fungal genome, I don’t know, is 30 megabases? Basidiomyetes might get to 50. Some of them go to …
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The team also provided several access points for these datasets. As part of a larger microbiome data integration …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … and his colleagues developed first worked on a reference dataset that included genome sequences known to be … combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA … many structures as you can, and then you use that trained dataset to interrogate the new data, to try and find those …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … A single sample was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a single cell dataset of nearly 500 single cell genomes. The single cell …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate …
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Cultivating Symbiotic Antarctic Microbes
… as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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