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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … more than 100 algal genomes, compare them, and visualize supporting experimental data. The Impact Algae are important …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea) superphylum of extremophilic archaea first outlined by JGI … This work was supported by the Australian Research Council (DP150100244) …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome … be associated with a plant’s sex. One outcome could be superfemale plants that have increased fruit and seed yield. …
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Marine Microbe Contains Multitudes
… bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In … four subgroups, adapted to different oceanic depths and relying on different ways of living. The Impact Microbes help …
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Disclaimer
… system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … employees, makes any warranty, express or implied, including the warranties of merchantability and fitness for a … process disclosed, or represents that its use would not infringe privately owned rights. …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes … contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) and Georgia Genomics and …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: … And the other one is called Bacteriology. But it’s supposed to include all microbes in it. But yeah, it’s called …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … microbial DNA is manually separated into a few different groups based on its density — DNA containing isotopes is …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. This study …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … mitochondrial genome into the nuclear genome over time — supporting the notion that the boundary between these two …
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Viruses Reprogram Cells into Different Virocells
… cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … Ohio State University and the University of Michigan studying how virus infections cause significant metabolic changes … of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative …
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