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… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk …

… JGI is in the process of shifting its operations from Walnut … Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … to revive the art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in …

… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted …

… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 …

… data set will help identify how different elements of the ecosystem interact and respond to changes in the … generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … Additional Resources  …

… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Wilbanks has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …

… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … to gain hands-on experience in molecular biology and plant functional genomics, because this work is essential for …

… Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … While are still working on finalizing the tree and related publication the tree is still in development and not … 15.  Q: What is the user annotation process (are these functional annotations) and how are these integrated within …