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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … plant fibers. But are they both actually doing the job? By analyzing the enzymes present in the complex organic matrix … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … — ultimately assembling over 220 Tb of sequences and obtaining 700 Gb of assemblies. The team skipped the binning …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … advanced the field by providing robust methodologies for analyzing and understanding viral genomes and their … In a  2019 paper , the team applied computational methods and analyses developed for JGI-enabled research …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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A New Method to Correct for Habitat Filtering in Microbial Correlation Networks
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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A Simple and Versatile Cell-Free Expression Method for Producing Secondary Metabolites
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … on Microbiome Data Science. His group is developing novel methods for enabling large-scale comparative analysis, as …
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Tina Clarke
… the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role … diverse HR related matters. She began her HR journey after obtaining her BA degree in Psychology from Sonoma State …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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