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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo …
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