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… in Biochemistry, University of Washington … Shen et al., Mitochondrial ATP generation is more proteome efficient than … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …

… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. … board member for Scientific Reports … Education … Selected Publications … Awards and Service …

… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis … understand what genes exist across the species. Earlier pan-genomes for other plants, like the soybean relative Glycine …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The …

Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor …

… technologies have led to an abundance of microbial genomes becoming available to the global research … a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually … Data Science group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” …

… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in … DNA sequencing can help scientist to recover the genomes of these viruses and associate them with their …

… to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  … and improve the quality of metagenome-assembled viral genomes. The paper appeared in  Nature Biotechnology . Igor …

Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …