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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … complex wiring behind a city’s power grid. Just as the flow of electricity controls when and where lights turn on or … processes.  Traditionally, mapping this intricate network of regulatory “switches” in plants at a large scale was akin …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … Center (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the side of the road to collect small weedy plants and bring them … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and analysis of their data at the time. Following the publication of their paper in 2011, Dr. Sekimoto from …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and you’re about to listen to the 3rd and final part of Natural Prodcast’s “Primer” episodes. This IS the third …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … interactions? Do generalist viruses run rampant, capable of infecting different host species? Or, do they tend to … the mat’s viruses specialize to single hosts, and instead of lysing them, which appears to be prevalent in marine …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … three different fungal guilds in a range of different locations. They sampled soils in four forest ecosystems, …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature … , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA … most pressing energy and environment challenges. The JGI offers these solutions to the worldwide scientific community …
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