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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … These advancements allow controlled sample transport for mass spectrometry applications, for example, or the timely … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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Prepublication data sharing
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Clustering Categorical Data
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … facilities that we worked with are cutting edge in terms of analysis and the fascinating results that we managed to …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. …
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