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Taxonomic and functional restoration of tallgrass prairie soil microbial communities in comparison to remnant and agricultural soils
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Insights into the Maize Pan-Genome and Pan-Transcriptome
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … New findings from this line of research combined with past insights will allow the identification of potentially novel …
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Natural Prodcast Episode 16: Marcy Balunas
… that there wasn’t enough application there. And so I moved from there to plant natural products, getting a PhD in … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … only about 20% of their fungal species. To make useful comparisons, the researchers had to work outside of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … nutrient-poor conditions. It lives in a range of habitats — from brine pockets and melt pools, and within the water … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and what they do. Summary The name PhycoCosm stems from the Greek phykos , meaning seaweed. Seaweeds are algae, … data are available, a user can also analyze gene expression from published experiments; study DNA methylation, which …
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Better Genome Editing for Bioenergy
… and genes that lead to increased lipid production. These insights into  Y. lipolytica biology and lipid metabolism … Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … between the trees, microbes and soil chemistry offers insights into how these ecosystems cycle nutrients like … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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