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Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Olpidium, The Key to the Origin of Terrestrial Fungi
… reduce crop yields. Like the typical chytrids and other early-diverging fungi, Olpidium reproduces by zoospores that … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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Dealing with Drought: Uncovering Sorghum’s Secrets
… exactly water becomes a limiting factor – before or after flowering. For the study, the team grew two sorghum … drought condition, no water was given during weeks 3 to 8 before flowering. In the post-flowering period … the overall experimental design, sequenced the RNA from nearly 400 root and leaf samples and helped analyze the …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root transporters in plant-microbiome …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… adaptation strategies used by liverwort are also seen in flowering plants, or angiosperms, suggesting they are … used as a model for evolutionary studies. Its place among early-diverging plant lineages makes it ideal for … M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green …
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Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … 824 new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back … Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … gene families to understand enzyme activity. As another early career researcher on the UEC, she is interested in … on the interactions between seagrasses, considered marine flowering plants, and their microbiomes. She is exploring …
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