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The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
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Identification, Heterologous Expression, and Characterization of the Tolypodiol Biosynthetic Gene Cluster through an Integrated Approach
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Biases in genome reconstruction from metagenomic data
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … Danforth Plant Science Center. Collaborators benefitted from sequencing resources as part of the Community Science … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones
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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … blind man touches – a tusk, the ear, or the tail – they individually decide that the elephant is either dangerous, …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . 39(5):578-585. Nayfach S, et … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Microbial Genomics & Metagenomics (MGM) Workshop
… designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for … data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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Synthetic Biology Informatics Group
… methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as …
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Len Pennacchio
… at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where … and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from NIH. … serves as the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single …
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