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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s … recovering draft metagenome-assembled genomes for seven novel species of Acidobacteria through an approved CSP … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the … This work was supported by the Department of Energy (DOE) Office of …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … them to sequencing data. At the workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) … (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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Webinar: MycoCosm Tutorial
… While are still working on finalizing the tree and related publication the tree is still in development and not … 10.  Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. … is a fungal genomics and multi-omics resource. JGI also has designated resources for plants (phytozome), algae …
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An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology
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Unlocking the potential of metagenomics through replicated experimental design
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Sharing Structure and Function in Biological Design with SBOL 2.0
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep … have been really powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first … in more details. These techniques allowed him to observe novel, membrane-bound compartments that contain DNA … technique known as BONCAT to identify areas involved in protein-making activities, that confirmed that the entire …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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