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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
… Adapting the graduate research experience amidst a global pandemic   …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … (LIMS) system. He previously led the NGS Software team and metagenomic data platform at Zymergen, a synthetic biology … Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., Hendrix, S. …
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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