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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … data generated over the past three decades, their study assesses what fraction of the microbial diversity we know … isolates, metagenome-assembled genomes (MAGs) with varying quality scores representing potential genomes, and nearly …
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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CSP Large Scale Call
… and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … While applications will be accepted that address any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that are listed in the call and leverage …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … 4.  Q(uestion): Are all CSP produced data automatically assembled and run through your annotation pipeline then … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little bit of …
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Propagation of viral genomes by replicating ammonia-oxidising archaea during soil nitrification
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De novo Nanopore read quality improvement using deep learning
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … detected in the samples. Simon Roux co-organized the Viral EcoGenomics & Applications (VEGA) Symposium series. …
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High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)
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