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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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The Switchgrass Genome: Tools and Strategies
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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Webinar: MycoCosm Tutorial
… of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you … While are still working on finalizing the tree and related publication the tree is still in development and not … sequence but deliver a complete package including standard bioinformatics analyses. Average times for different JGI …
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our … as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … RNA-seq and metabolomic insights in lignin biosynthetic pathway edited populus …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. … Ridge National Laboratory is managed by UT-Battelle, LLC, for the U.S. Department of Energy under contract …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and mentors Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna … Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses.  …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and … received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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