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Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …

… complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a …

Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led …

… which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the …

… of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …

Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …

Congratulations to US Department of Energy (DOE) Joint Genome … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …

Across four forests, researchers have leveraged data from the 1000 … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …