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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … a gene called Less Shattering 1 (SvLes1); gene editing studies led by co-first author Pu Huang confirmed that it …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental …
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … researchers came from two environments: natural forests and plantations managed through human intervention. By … Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined …
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … metagenomic detection pipeline: First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG …
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Metabolomics
… samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … a high throughput approach for isolating individual bacterial cells and amplifying their genetic material, thus …
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CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in … machine learning to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides …
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… algae for industrial applications, and developing RNA barcoding systems to optimize microbial bioreactors. This … enzymes discovered in extreme environments to engineered microbiomes that accelerate biomass processing. This year’s … approaches to unravel functional capabilities of plants, microbes and microbial communities, and …
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