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Microbial secondary metabolites: advancements to accelerate discovery towards application
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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A data analysis and coordination center for the human microbiome project
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … and animals by combining computational genome analysis, sequence-based genetic methods, and comparative … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … researcher at the Oak Ridge National Laboratory (ORNL), based in Oak Ridge, Tennessee. Recently, Lawrence, in … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable … phase of user-accessible project types, in which DNA-based molecules can be chromosomally integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Poisson hurdle model-based method for clustering microbiome features.
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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