Results

Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Evidence of Asexual Overwintering of Melampsora paradoxa and Mapping of Stem Rust Host Resistance in Salix
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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How Filamentous Fungi Sense Food
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon
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The Surprising Structure of a Shrub Willow Sex Chromosome
… willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Rewiring metabolism of Clostridium thermocellum for consolidated bioprocessing of lignocellulosic biomass poplar to produce short-chain esters
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Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
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