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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … of algae, and sampling of the length and breadth of algal diversity, the numbers of sequenced algal genomes, and … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior authors. The team was also … level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab also used a labeling …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … that truly integrated the capabilities of more than one facility. The FICUS initiative not only simplifies and …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … with at least two genomes, and another 190 families with one. There are another 100 genomes in progress and 200 that …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … said Eugene Koonin, a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … group of decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest … are useful in a wide range of environments.  Collecting and analyzing these samples was a global collaboration that …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … program and current PhD student, reached this milestone with a recent publication in Molecular Biology and … summer, Wint hosted a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …
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Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … and Vice-Chair will be selected by the UEC members for one-year terms, after which the Vice-Chair will become … UEC report. Elections Elections are held annually with one-third of the seats being filled each year. Anyone can …
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