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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, about the project. The story is reposted here in …
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global …
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A Bioinformatician's Guide to Metagenomics
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … NY PhD in Physics, Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY …
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ClaMS: A Classifier for Metagenomic Sequences
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