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… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … a fishing town and we know little about its coastal microbial ecology. We also know little about where to …

… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … role in the development of life on Earth; the iron-oxide microbial mats at Yellowstone offer researchers an analog … the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified …

… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been …

… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fungi suggested that there were multiple flagellum loss events during the diversification of terrestrial fungi, … known fossil record of land plants and evolved in early microbial biocrust environments.     …

… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … could allow them to manipulate microbiomes to facilitate microbial solutions to challenging environmental problems, …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

… For the Joint Genome Institute, the end of 2018 was marked by a … Basepairs — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive …

… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, … from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant …

… joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of …

… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens …