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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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Genome Project Standards in a New Era of Sequencing
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Axel Visel
Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation … Deputy for Science Programs. Click to learn more about our seven science program — their areas of focus, major … policy, engaging in interactions with the scientific community at large. … 2021 LBNL Director’s Award for …
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A Collaboration to Improve Plant Genome Annotations Across Species
JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship … effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 Doing the JGI internship has … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of Lawrence … the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer professional development … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for …
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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Earth BioGenome Project: Sequencing life for the future of life
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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me some great insight into my career …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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The Earth BioGenome Project 2020: Starting the clock
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