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Microbial Program
… and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and including …
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Annual Genomics of Energy & Environment Meeting
… of leaders from diverse disciplines to highlight how they are addressing the world’s most pressing energy and environmental challenges.  … on a competitive, peer-reviewed basis to the worldwide scientific community can advance your research goals. …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident … an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the ocean’s extremes … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … Cole said.  Other authors on the paper are Danielle Goudeau, Thai Dao, Ronan O’Malley, Rex Malmstrom, Axel Visel … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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iPHoP: A Matchmaker for Phages and their Hosts
… understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … do anything, they must find a host, and not just any host will do. It must be a specific host the virus has adapted to … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of …
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Cataloging the Microbes that Manage the Health of River Systems
… provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They also … Science Foundation awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida … was happy to offer advice but declined to offer actual scientific help,” said Jonathan Benskin, who teaches the … JGI does not only contribute to the body of current scientific knowledge, they are also equipping the next …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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Ben Bowen
… chemoinformatics, and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and … Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for Exceptional Achievement … Google Scholar. … Education … Awards and Honors … Selected Publications …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  microbes resist. The battle waged below the Earth’s … within the Census of Deep Life Sequencing call 2018, phase 14 project “Development of novel archaeal viruses and the …
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You Can Move, But You Can’t Hide
… seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and … and the National Energy Research Scientific Computing Center (NERSC) (https://ror.org/05v3mvq14), are DOE Office of Science User Facilities operated …
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What Happens Underground Influences Global Nutrient Cycles
Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national … being conducted through the  Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial … experiment in the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks …
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