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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental … address some of the most pressing challenges of our time. For more information, please visit  …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is … of the key community participants and enabling future metagenomics studies.   … on Plant Sciences (CEPLAS), both funded by the Deutsche Forschungsgemeinschaft. F.M. salary was covered by the …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Doubling Down on Known Protein Families
… — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The Impact In their existence as …
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JGI Portals
… discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … root-associated microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, …
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