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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring …
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JGI-USCCN Strain Sequencing Opportunity
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper …
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Targeted single‐cell sequencing
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