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Applying Viral Genomics Expertise to Understanding the Human Virome
… global researchers on projects related to understanding how the interactions between viruses and their host microbes … Simon Roux. Kyrpides is part of another project led by Owen White at the University of Maryland, Baltimore. Both … and Roux, has an extensive track record of developing cutting-edge tools for viral genomics. Notable examples …
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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JGI@25: Roots of a Mutualist Relationship
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … talk at the 2015 JGI Annual Meeting:   Francis Martin on how JGI has changed mycology, excerpted from his talk at the …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy … in understanding which processes change biodiversity, and how these changes affect the dynamics and functioning of … the genetic basis of fungal community assembly on dead wood decomposition. She’s also participated in the 1000 …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… mode’, where they do very little.  SIP experiments can show which species actively munch on a specific chemical … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight … labeling for these experiments.  This group included Elisha Wood-Charlson, User Engagement Lead for the DOE Systems …
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Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Gut Fungi: Unexpected Source of Novel Chemicals
… for self-defense. But the compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more easily convert plants into … that these expressed genes translated into expected proteins. That work was done in collaboration with the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… mechanism to turn off shattering and domesticate crops.” How shattering occurs varies widely between crops, Kellogg … a gene associated with leaf angle, which determines how much sunlight leaves can get and in turn serves as a … and improve human health. So there’s a major question: how to turn a C3 crop into a C4 crop. There should be a …
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Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem
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Effects of Polar Light Cycle on Microbial Food Web
… sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the ecosystem of …
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