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Triggering Morel Fruiting
DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are acquired from … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest … . … Morel Mushrooms on MycoCosm Data Portal …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … of cultured isolates. If you’re interested in learning more, fill out  this survey . … The U.S. Department of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … complex switchgrass genome. The reference genome built off more than a decade of work; as sequencing technologies … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … to use resources to sequence it,” Patrinos said. After many more meetings and letters of persuasion, Patrinos and his … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen … multi-institutional research team that combined field data with a reference switchgrass genome to associate …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. In late 2021, the JGI …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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JGI announces 2024 New Investigator portfolio
… share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and … inclusion in the December 2024 review. You can also find more information about the JGI’s various proposal calls here. …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, … needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … enzymes are an optimal study subject that could lead to more sustainable energy production.  However, less than 10% … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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