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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Baldrian’s team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) … referencing the database, Baldrian’s team was able to identify enzymes in the soil and who made them. Based on data … This work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences … team. “They produced fantastic scientific results this year by assembling a collection of large datasets that will … the microbial dynamics in freshwater lakes over a several year period.” “We’ve been thrilled to see these enormous …
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Glacier ice archives nearly 15,000-year-old microbes and phages
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JGI Mural
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Three Join the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three … miles away in another city and county began more than three years ago. For JGIers, the moving process began in 2017 with …
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DNA Synthesis Program
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Back in the Lab: the 2023 Summer Intern Experience
… the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the …
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Taking Stock of the Known and Unknown Microbial Space
… biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, Seshadri, … data directly from environmental samples over the years have significantly expanded the known diversity of … The team plans to convene a discussion later this year related to efforts to increase the number of cultured …
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Plant Microbial Interactions Group
… system. We seek to expand beyond this model system by identifying phages and characterizing this multipartite phenomenon …
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Matt Blow
… Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for …
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Scaling Up Existing Skill Sets
… shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: … even know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in Quantitative and Systems …
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