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iPHoP: A Matchmaker for Phages and their Hosts
… these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data …
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A Plant Root Atlas for Tracking Developmental Trajectories
… by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out … Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The … Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA is a refined capability …
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Cultivating Symbiotic Antarctic Microbes
… a dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized … S.E. was supported by the EMBO Long-Term Fellowship ALTF 188 –2014, which is co-funded by the European Commission …
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2025 NeLLi Symposium
… discussions centered on how to capture, define, quantify, and functionally characterize microbial diversity. The … Rock Canyon National Conservation Area This is an all-day (8:00am-3:00pm) field trip on Saturday, November 8 that includes easy hiking. Participants should bring …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation could look like. In one article, … ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. As the …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …
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Four Researchers Join JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms, or longer if they serve in chair positions, and …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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