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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the … viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that …
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JGI@25: From Life at the Extremes to Editing Genomes
… other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. Cohort-based learning for … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… Completed VFP applications are due on January 12, 2022. Faculty interested in developing proposals with …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… distinguish males and females even when plants with multi-year generation times are young and haven’t physically … Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and … and the National Key Project for Basic Research (2012CB114504). The work conducted by the U.S. Department of …
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Products
… Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another successful year. I was so …
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Crysten Blaby-Haas
… for Science, 2020 NIH NRSA Postdoctoral Fellowship (F32), 2012 – 2015 Bright Futures Academic Scholarship, 2002 – 2006 … extremophilic algae reveals iron economy management. PNAS  120(30):e2305495120. Pasquini M, Grosjean N, Hixson KK, … S, Blaby-Haas CE, Friedrich T, Daldal F, Koch H. (2019) The  cbb 3-type cytochrome oxidase assembly factor …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities …
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Nikos Kyrpides
… global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and … across Earth’s biomes. Nature 4:1895-1906 Sberro H. et al. 2019 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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