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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome …
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JGI@25: Studying Sorghum’s Survival Skills
… photosynthesize and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri … of efficient, automated approaches to analyze and classify sequence data at this scale is essential.”   … The U.S. …
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Access to Rock Star Scientists
Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that started six years earlier, researchers put together what they called the … a variety of methane-mitigation goals. One aim is identifying chemical compounds that could inhibit microbial …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity … nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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Tapping the treasure trove of atypical phages
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, …
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Effects of Polar Light Cycle on Microbial Food Web
… bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar … Antarctica, was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues … Taking a conservative approach, we were able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 countries. Those from the JGI whose publications rank in … in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s …
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