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Secondary Metabolites Program
… DNA synthesis and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded … Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). This is based on …
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UC Merced Interns Reflect on Their JGI Summer Projects
… summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … deep-sea, oil-eating bacterium from a single cell. Several years later, the continuing single cell sequencing … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE … funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah … plant root exudates on the plant microbiome. This year, however, there was a new aspect to the project - they …
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Enhancing microRNA167A expression in seed decreases the α‐linolenic acid content and increases seed size in Camelina sativa
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The … As previously mentioned, it’s a method that’s been used for years but in most cases, the majority of the cell’s genome …
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JGI announces final round of 2022 Functional Genomics awardees
… Twice each year, the JGI accepts proposals for state-of-the-art … six researchers accepted for 2022. Proposals are accepted year-round; the next deadline is July 31. You can learn more …
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A More Intuitive Phytozome Interface
… genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, … deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer … restoration. They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on …
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Ian Blaby
… a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… the health care to the financial sector — whether to identify studies and protocols or analyze and predict market … the various machines. You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of … by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater …
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Four Researchers Join JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms, or longer if they serve in chair positions, and …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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