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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at … the data and work with the data. Q: How would you include a reference or citation in a proposal? A: If you’re presenting … or if you want to give some background of the field, references would be encouraged. And you can either put those …
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A Community Resource for Secondary Metabolite Researchers
… time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … agriculture. This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly … ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC repository that aspires to …
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Learning to Look
… display. The search tool Roux and his colleagues developed first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… a key ecosystem nutrient. The Impact This study is the first to dig into a forest floor ecosystem to discover what … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … and metatranscriptome sequences, as well as individual reference fungal genome sequences assembled as part of its …
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Better Genome Editing for Bioenergy
Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … “Give me six hours to chop down a tree and I will spend the first four sharpening the axe.” In this study,  published … order to interrogate each one’s function. However, the team first needed to fix a defect in the approach: CRISPR-Cas9 …
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How to Target a Microbial Needle within a Community Haystack
… has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … more about environmental samples starts with researchers first sequencing the complex community and then separating …
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JGIota: Sequencing Shiitakes with David Hibbett
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Targeted single‐cell sequencing
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Introduction: Sequences and consequences
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Fishing for Novel Cellulose Degraders
… approach to isolate cellulose-degrading microbes. They first bound single microbes to fluorescently labeled … whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its performance, and then applied it to …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … story of the blind men who encounter an elephant for the first time. Based on the single body part each blind man … was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by …
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