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The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from infecting viruses and …

Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri U. et al. …

On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that … marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New … analysis, as well as how they can be shared with and used by students. Solomon  is an associate professor at the …

… research is very sentimental to me.” Mentors: Crysten Blaby-Haas & Bikash Shrestha Project: “ Detecting Isotope Bonds … that work here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” … Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : …

… warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … Communications , warmer waters and communities dominated by prokaryotes could replace those of eukaryotes much more … on the study — a collaboration of eight institutions led by UEA and including the U.S. Department of Energy (DOE) …

… the biogeochemical cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, … single-cell and metagenomic sequencing. A team co-led by Mária Džunková, postdoctoral researcher at the U.S. …

… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … and Simon Roux. Kyrpides is part of another project led by Owen White at the University of Maryland, Baltimore. Both … , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an …

… little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a … than historically presumed — widening the avenues for exploring methane as a source of bioenergy, better …

… the value of conducting large-scale single cell genomics by collecting nearly 500 single cells from a single low … specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome assembled … genomes directly from environmental sequence data, by piecing each genome together from large mixtures of …

July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint … sequence is most likely not an inovirus. But if these nearby genes are both short and novel, then that’s a very good … phages to help the bacterial host resist foreign genetic elements. In some cases, Roux and his colleagues found that …

… for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …