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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … analysis on JGI’s plant data portal  Phytozome , which is a community repository and resource for plant genomes. They …
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A toolkit for microbial community editing
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Meeting Code of Conduct
… policy. Our aim in hosting an event is to build a stronger community. Our goal is to create an environment where …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for … 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and … The knowledge gained from 8X switchgrass is a valuable resource towards the effort to generate climate resilient …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … colitis reveals a disease-associated bacteriophage community.  Nat Microbiol. 3(9):1023-1031 Harrington LB et …
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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