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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH … in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the … nutrient cycles can help researchers contribute toward developing the bioeconomy. Now, JGI researchers are lending …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe …
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic … carbon sequestration into sustainable biomaterials, and developing high-throughput methods to reveal metabolic …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus … annotating and analyzing the genome in order to find the genetic traits responsible for  P. trifoliata ’s hardiness, …
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Development and Initial Characterization of a HAPPY Panel for Mapping the X. Tropicalis Genome
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities … in collaborative, interdisciplinary research focused around developing foundational knowledge of viral diversity and …
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