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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … biofuel, the JGI has also helped researchers understand a fungus that threatens these crops as they grow. Asian … Research (INRAE) to sequence a reference genome for the fungus Phakopsora pachyrhizi , a major pathogen of soybean …
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A Complex Confection Decoded: Sugarcane Reference Genome
… partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … that durable resistance to brown rust disease caused by the fungus,  Puccinia melanocephala . This plant pathogen used … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and transition of … roots with zoospores of Olpidium bornovanus and allowed the fungus to develop within the host root. Upon maturity, the …
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Triggering Morel Fruiting
… they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition mechanisms of … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology … flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. … is an essential DNA modification in the early-diverging fungus Rhizopus microsporus." Nature Communications 16, no. …
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Busting the Unbreakable Lignin
… as well as degradation products that accumulated as the fungus did its work.  The UC Santa Barbara team worked with … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies grants …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … seedlings grown in a controlled environment chamber, so the fungus could colonize the plants’ roots. Then, comparing …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging parasitic fungus to more than one-million base pairs in desert … metagenomic detection pipeline: First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG …
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DAP-seq Drives Robust Mapping of Gene Regulation
…   Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … the “dark” functional realm. Their focus sharpened on deciphering the intricate world of protein functional …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the …
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Webinar: MycoCosm Tutorial
… ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are … at  https://genome.jgi.doe.gov/Dicpu1 , but being not a fungus and not related to known algal clades, it is not … and quantifications, and shipping. A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to compare …
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