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JGI Early Career Researchers Featured in mSystems Special Issue
… was applied to a recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. … stable isotope probing (DNA SIP) relies on incubating DNA with isotopically-labeled compounds to link active microbes … makes a pitch for readers to get involved in the developing field of virus ecogenomics. While microbes regulate the …
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John Vogel
… switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts … in the Brachypodium distachyon pan-genome correlates with population structure. Nat. Comm. 8(1), 2184 doi: …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Niel Prize recognizes contribution of scholarship in the field of microbiology and is awarded on the recommendation … Niel Prize, the committee recognized Woyke as a pioneer in uncovering the hidden diversity of “microbial dark …
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Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New … Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories during the … Honeker, University of Arizona (lightning talk): “Effect of drought on soil microbial metabolisms driving carbon …
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Soil virus offers insight into maintaining microorganisms
… by the JGI, scientists have begun the complex process of uncovering the hidden secrets of soil viruses. The Impact The specific protein … can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Busting the Unbreakable Lignin
… anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … cultivated anaerobic fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to … (nuclear magnetic resonance) data, gathered using magnetic fields to diagnose electronic structure and functionality on …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … allows plants to better survive in those environments,”  Karen Serrano said. She is first author of this paper and a … mycorrhizal symbiosis in other bioenergy grasses, like sorghum and switchgrass. We’re optimizing systems now, so …
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Diversity, evolution, and classification of virophages uncovered through global metagenomics
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Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
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