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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … The work conducted by the US Department of Energy Joint Genome …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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Matt Blow
… these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome … to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … growth of DNA sequencing data, coupled with recent computational technology advances in management, processing … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … 10 times larger. And yet, while they are found everywhere, comparatively little is known about viruses, much less those …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from a DOE …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have …
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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … and requesting an optional letter of feasibility to accompany their proposal  should fill out this form . Please …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a genome has been …
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