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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And …
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Natural Prodcast Episode 3: The Primer, Part 3
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they … we need people from outside of the JGI to come to us with projects that will help us actually drive this strategic …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited … of 21 fields appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more …
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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … four genes, including one with no prior known function. The project’s success demonstrates how to sharpen the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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Dan Rokhsar
… in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to … and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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User Programs
Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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