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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the … and Timothy J. Donohue. "Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… to human health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence … conditions. While scientists around the world were busy sequencing the human genome, an arms race was being waged. … over the years. The DOE brought together the people and resources from these three national labs to form the DOE …
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Evolution of a Fungal Gene Expression Regulator
… specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes … Core (GGBC) at the University of Georgia provided sequencing and computational resources, respectively. This work was supported by the …
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Silver age of GOLD introduces new features
… genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of … stored with them. GOLD provides manually curated metadata resources for organisms and environmental samples. The … Information is also obtained and cross-checked with public resources including NCBI Taxonomy and various culture …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… for User Science (FICUS; #49499) program and used resources at the DOE Joint Genome Institute and the …
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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … between JGI and scientists in the Computational Resources Division (CRD), in order to create more useful … scientist in Biological Systems and Engineering / Computing Resources Division (BSE/CRD). Deep learning algorithms can …
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Nick Everson
… of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … space and facilities, finance and procurement, human resources, safety, and administrative activities. The Deputy …
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Webinar: MycoCosm Tutorial
… Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … about myxomycetes (Amoebozoa), would you consider them for sequencing? A: We do have 1 Amoebozoan, > Dicyostelium … genomics and multi-omics resource. JGI also has designated resources for plants (phytozome), algae (PhycoCosm), and …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… challenges. But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … enzymes, and pathway discovery approaches and provided the resources needed to foster interdisciplinary …
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Mindfully Moving JGI
… Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at … and sustainability. But it’s also so we’re not wasting Lab resources.” During these cleanout days, multiple speedpaks …
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