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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … a Nobel Prize in Chemistry to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the … UC Berkeley seeks other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s …
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The International Virus Bioinformatics Meeting 2020
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s Office of Biological and … the DOE and National Institute of Health that this effort would prove invaluable. By the mid-1990s, the …
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Philympics 2021: Prophage Predictions Perplex Programs
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The Earth BioGenome Project 2020: Starting the clock
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Plant-Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … responses … Selected Publications … Research Team Alumni … For further details, please reach out to …
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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A unified initiative to harness Earth's microbiomes
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Harnessing glycosylation to improve cellulase activity
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