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… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed …

… user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … 2012 – 2015 Bright Futures Academic Scholarship, 2002 – 2006 HCA Foundation Scholarship, 2002 & 2004 Graduate … into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). …

… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … specific database of IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of …

… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of …

… look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider …

… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to …

… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …

… Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the …