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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Dealing with Drought: Uncovering Sorghum’s Secrets
… first paper that describes sorghum’s response to drought, from a large-scale field experiment to uncover the … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … by the number of 8X individuals that had been collected from field work. When viewing the full distribution of …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Promoting the Power of Viral Metagenomics
… DNA or RNA contained in a sample that has been collected from any kind of environment you can think of – animal … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. From these data it is possible to answer a wide variety of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… From our partners … From our partners …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … rapid diagnoses for SOD. These techniques were also instrumental in tracing the genetic signature of the organism …
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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