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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from … This work received funding by the Alfred P. Sloan foundation (grant number …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … and leading to the discovery of features such as a new genetic code. More recently reported in Nature , she led a …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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Better Living Through Bioenergy
… are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer are harnessing the …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab … compare their work consistently. And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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THE Bioenergy Tree
… Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from … Laboratory scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that program oak trees …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , … communities in carbon cycling, in interactions with plants, and as drivers of methane production, nutrient …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to the … identification of several transcription factor regulating genes and enzymes that can modify composition of algal …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading … They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the physical …
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